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» Logic-Based Modeling in Systems Biology
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BMCBI
2006
145views more  BMCBI 2006»
15 years 4 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
CMSB
2009
Springer
15 years 10 months ago
The Equivalence between Biology and Computation
A major challenge in computational systems biology is the articulation of a biological process in a form which can be understood by the biologist yet is amenable to computational e...
John K. Heath
AMAI
2007
Springer
15 years 4 months ago
Reasoning about non-immediate triggers in biological networks
Modeling molecular interactions in biological networks is important from various perspectives such as predicting side effects of drugs, explaining unusual cellular behavior and dr...
Nam Tran, Chitta Baral
COGSR
2011
99views more  COGSR 2011»
14 years 11 months ago
A biologically realistic cleanup memory: Autoassociation in spiking neurons
Methods for cleaning up (or recognizing) states of a neural network are crucial for the functioning of many neural cognitive models. For example, Vector Symbolic Architectures pro...
Terrence C. Stewart, Yichuan Tang, Chris Eliasmith
PAMI
2007
138views more  PAMI 2007»
15 years 3 months ago
A Fast Biologically Inspired Algorithm for Recurrent Motion Estimation
—We have previously developed a neurodynamical model of motion segregation in cortical visual area V1 and MT of the dorsal stream. The model explains how motion ambiguities cause...
Pierre Bayerl, Heiko Neumann