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» Logic-Based Modeling in Systems Biology
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GI
2009
Springer
15 years 9 months ago
Massively-Parallel Simulation of Biochemical Systems
: Understanding biological evolution prompts for a detailed understanding of the realized phenotype. Biochemical and gene regulatory dynamics are a cornerstone for the physiology o...
Jens Ackermann, Paul Baecher, Thorsten Franzel, Mi...
ISMB
1993
15 years 5 months ago
Minimizing Complexity in Cellular Automata Models of Self-Replication
Understanding self-replication from an information processing perspective is important because, amongother things, it can shed light on molecular mechanismsof biological reproduct...
James A. Reggia, Hui-Hsien Chou, Steven L. Armentr...
LICS
2008
IEEE
15 years 10 months ago
A Logical Characterization of Individual-Based Models
Individual-based models are a relatively new approach to modelling dynamical systems of interacting entities, for example molecules in a biological cell. Although they are computa...
James F. Lynch
ISMB
1998
15 years 5 months ago
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
EVOW
2007
Springer
15 years 10 months ago
Modeling Genetic Networks: Comparison of Static and Dynamic Models
Biomedical research has been revolutionized by high-throughput techniques and the enormous amount of biological data they are able to generate. The interest shown over network mode...
Cristina Rubio-Escudero, Oscar Harari, Oscar Cord&...