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TCBB
2011
13 years 3 months ago
Visual Exploration across Biomedical Databases
Abstract—Though biomedical research often draws on knowledge from a wide variety of fields, few visualization methods for biomedical data incorporate meaningful cross-database e...
Michael D. Lieberman, Sima Taheri, Huimin Guo, Fat...
MMAS
2010
Springer
13 years 3 months ago
A Fast Multigrid Algorithm for Energy Minimization under Planar Density Constraints
The two-dimensional layout optimization problem reinforced by the efficient space utilization demand has a wide spectrum of practical applications. Formulating the problem as a non...
Dorit Ron, Ilya Safro, Achi Brandt
NAR
2011
209views Computer Vision» more  NAR 2011»
12 years 11 months ago
REPAIRtoire - a database of DNA repair pathways
REPAIRtoire is the first comprehensive database resource for systems biology of DNA damage and repair. The database collects and organizes the following types of information: (i) ...
Kaja Milanowska, Joanna Krwawicz, Grzegorz Papaj, ...
AAAI
2012
11 years 10 months ago
Dynamic Matching via Weighted Myopia with Application to Kidney Exchange
In many dynamic matching applications—especially high-stakes ones—the competitive ratios of prior-free online algorithms are unacceptably poor. The algorithm should take distr...
John P. Dickerson, Ariel D. Procaccia, Tuomas Sand...
BMCBI
2010
143views more  BMCBI 2010»
13 years 8 months ago
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location inf
Background: Graph drawing is one of the important techniques for understanding biological regulations in a cell or among cells at the pathway level. Among many available layout al...
Kaname Kojima, Masao Nagasaki, Satoru Miyano