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BMCBI
2008
133views more  BMCBI 2008»
13 years 10 months ago
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated
Background: The identification of transcription factor binding sites is difficult since they are only a small number of nucleotides in size, resulting in large numbers of false po...
Matthew S. Hestand, Michiel van Galen, Michel P. V...
CINQ
2004
Springer
116views Database» more  CINQ 2004»
14 years 2 months ago
A Survey on Condensed Representations for Frequent Sets
Abstract. Solving inductive queries which have to return complete collections of patterns satisfying a given predicate has been studied extensively the last few years. The specific...
Toon Calders, Christophe Rigotti, Jean-Franç...
SSDBM
2006
IEEE
153views Database» more  SSDBM 2006»
14 years 4 months ago
HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices
Large scale scientific data is often stored in scientific data formats such as FITS, netCDF and HDF. These storage formats are of particular interest to the scientific user com...
Luke J. Gosink, John Shalf, Kurt Stockinger, Keshe...
CSB
2005
IEEE
126views Bioinformatics» more  CSB 2005»
14 years 4 months ago
Visualization of Logic Analysis of Phylogenetic Profiles (LAPP)
Recently Bowers et al. [1] analyzed triplet logic relationships among 4873 Clusters of Orthologous Groups (COGS) from 67 fully sequenced organisms by calculating how well logic re...
Kay A. Robbins, Li Zhao
ICCS
2007
Springer
14 years 4 months ago
Enabling Very-Large Scale Earthquake Simulations on Parallel Machines
Abstract. The Southern California Earthquake Center initiated a major largescale earthquake simulation called TeraShake. The simulations propagated seismic waves across a domain of...
Yifeng Cui, Reagan Moore, Kim Olsen, Amit Chourasi...