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» MPI on a Million Processors
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1999
Tsinghua U.
13 years 12 months ago
Realizing the performance potential of the virtual interface architecture
The Virtual Interface (VI) Architecture provides protected userlevel communication with high delivered bandwidth and low permessage latency, particularly for small messages. The V...
Evan Speight, Hazim Abdel-Shafi, John K. Bennett
IPPS
1998
IEEE
13 years 12 months ago
Pin-Down Cache: A Virtual Memory Management Technique for Zero-Copy Communication
The overhead of copying data through the central processor by a message passing protocol limits data transfer bandwidth. If the network interface directly transfers the user'...
Hiroshi Tezuka, Francis O'Carroll, Atsushi Hori, Y...
SPAA
1997
ACM
13 years 11 months ago
HARP: A Fast Spectral Partitioner
- Partitioning unstructured graphs is central to the parallel solution of computational science and engineering problems. Spectral partitioners, such recursive spectral bisection (...
Horst D. Simon, Andrew Sohn, Rupak Biswas
HPDC
2010
IEEE
13 years 8 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
BMCBI
2010
116views more  BMCBI 2010»
13 years 7 months ago
permGPU: Using graphics processing units in RNA microarray association studies
Background: Many analyses of microarray association studies involve permutation, bootstrap resampling and crossvalidation, that are ideally formulated as embarrassingly parallel c...
Ivo D. Shterev, Sin-Ho Jung, Stephen L. George, Ko...