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» MPI-SIM: Using Parallel Simulation to Evaluate MPI Programs
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IPPS
2010
IEEE
13 years 5 months ago
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs
The Coarse-Grained Monte Carlo (CGMC) method is a multi-scale stochastic mathematical and simulation framework for spatially distributed systems. CGMC simulations are important too...
Lifan Xu, Michela Taufer, Stuart Collins, Dionisio...
ICS
2004
Tsinghua U.
14 years 26 days ago
Evaluating support for global address space languages on the Cray X1
The Cray X1 was recently introduced as the first in a new line of parallel systems to combine high-bandwidth vector processing with an MPP system architecture. Alongside capabili...
Christian Bell, Wei-Yu Chen, Dan Bonachea, Katheri...
CPHYSICS
2010
135views more  CPHYSICS 2010»
13 years 7 months ago
An events based algorithm for distributing concurrent tasks on multi-core architectures
In this paper, a programming model is presented which enables scalable parallel performance on multi-core shared memory architectures. The model has been developed for application...
David W. Holmes, John R. Williams, Peter Tilke
CONCURRENCY
1998
115views more  CONCURRENCY 1998»
13 years 7 months ago
Falcon: On-line monitoring for steering parallel programs
Abstract Advances in high performance computing, communications, and user interfaces enable developers to construct increasingly interactive high performance applications. The Falc...
Weiming Gu, Greg Eisenhauer, Karsten Schwan, Jeffr...
BMCBI
2006
179views more  BMCBI 2006»
13 years 7 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...