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BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
13 years 9 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
ALT
2005
Springer
14 years 6 months ago
PAC-Learnability of Probabilistic Deterministic Finite State Automata in Terms of Variation Distance
We consider the problem of PAC-learning distributions over strings, represented by probabilistic deterministic finite automata (PDFAs). PDFAs are a probabilistic model for the gen...
Nick Palmer, Paul W. Goldberg
ICML
2005
IEEE
14 years 10 months ago
Weighted decomposition kernels
We introduce a family of kernels on discrete data structures within the general class of decomposition kernels. A weighted decomposition kernel (WDK) is computed by dividing objec...
Sauro Menchetti, Fabrizio Costa, Paolo Frasconi
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Rule Clustering and Super-rule Generation for Transmembrane Segments Prediction
The explanation of a decision is important for the acceptance of machine learning technology in bioinformatics applications such as protein structure prediction. In past research,...
Jieyue He, Bernard Chen, Hae-Jin Hu, Robert W. Har...
WWW
2005
ACM
14 years 10 months ago
Learning domain ontologies for Web service descriptions: an experiment in bioinformatics
The reasoning tasks that can be performed with semantic web service descriptions depend on the quality of the domain ontologies used to create these descriptions. However, buildin...
Marta Sabou, Chris Wroe, Carole A. Goble, Gilad Mi...