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BMCBI
2005
142views more  BMCBI 2005»
13 years 7 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds
JAIR
2007
87views more  JAIR 2007»
13 years 7 months ago
Supporting Temporal Reasoning by Mapping Calendar Expressions to Minimal Periodic Sets
In the recent years several research efforts have focused on the concept of time granularity and its applications. A first stream of research investigated the mathematical model...
Claudio Bettini, Sergio Mascetti, Xiaoyang Sean Wa...
JAIR
2007
117views more  JAIR 2007»
13 years 7 months ago
On the Formal Semantics of Speech-Act Based Communication in an Agent-Oriented Programming Language
Research on agent communication languages has typically taken the speech acts paradigm as its starting point. Despite their manifest attractions, speech-act models of communicatio...
Renata Vieira, Álvaro F. Moreira, Michael W...
BMCBI
2005
87views more  BMCBI 2005»
13 years 7 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
BMCBI
2005
82views more  BMCBI 2005»
13 years 7 months ago
Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases
Background: Quality-control is an important issue in the analysis of gene expression microarrays. One type of problem is regional bias, in which one region of a chip shows artifac...
Mark Reimers, John N. Weinstein