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LSGRID
2004
Springer
14 years 3 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...
BIBE
2003
IEEE
133views Bioinformatics» more  BIBE 2003»
14 years 3 months ago
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...
IPPS
2003
IEEE
14 years 3 months ago
Applying Aspect-Orient Programming Concepts to a Component-Based Programming Model
Abstract— The execution environments For scientific applications have evolved significantly over the years. Vector and parallel architectures have provided significantly faste...
Thomas Eidson, Jack Dongarra, Victor Eijkhout
PADS
2003
ACM
14 years 3 months ago
HLA-based Adaptive Distributed Simulation of Wireless Mobile Systems
Wireless networks’ models differ from wired ones at least in the innovative dynamic effects of host-mobility and open-broadcast nature of the wireless medium. Topology changes d...
Luciano Bononi, Gabriele D'Angelo, Lorenzo Donatie...
SIGMOD
2010
ACM
214views Database» more  SIGMOD 2010»
14 years 2 months ago
ParaTimer: a progress indicator for MapReduce DAGs
Time-oriented progress estimation for parallel queries is a challenging problem that has received only limited attention. In this paper, we present ParaTimer, a new type of timere...
Kristi Morton, Magdalena Balazinska, Dan Grossman