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BMCBI
2011
13 years 3 months ago
Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
Background: As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all bran...
Jialiang Yang, Jun Li, Liuhuan Dong, Stefan Gr&uum...
GECCO
2003
Springer
132views Optimization» more  GECCO 2003»
14 years 2 months ago
Evolutionary Multimodal Optimization Revisited
Abstract. We revisit a class of multimodal function optimizations using evolutionary algorithms reformulated into a multiobjective framework where previous implementations have nee...
Rajeev Kumar, Peter Rockett
COMPGEOM
2003
ACM
14 years 2 months ago
The smallest enclosing ball of balls: combinatorial structure and algorithms
We develop algorithms for computing the smallest enclosing ball of a set of n balls in d-dimensional space. Unlike previous methods, we explicitly address small cases (n ≤ d + 1...
Kaspar Fischer, Bernd Gärtner
LATINCRYPT
2010
13 years 7 months ago
Cryptanalysis of the Hidden Matrix Cryptosystem
Abstract. In this paper, we present an efficient cryptanalysis of the socalled HM cryptosystem which was published at Asiacrypt’1999, and one perturbed version of HM. Until now, ...
Jean-Charles Faugère, Antoine Joux, Ludovic...
HPDC
2010
IEEE
13 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...