Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
We generalize Shimizu et al's (2006) ICA-based approach for discovering linear non-Gaussian acyclic (LiNGAM) Structural Equation Models (SEMs) from causally sufficient, conti...
Gustavo Lacerda, Peter Spirtes, Joseph Ramsey, Pat...
Motivation: The fruit fly (Drosophila melanogaster) is a commonly used model organism in biology. We are currently building a 3D digital atlas of the fruit fly larval nervous syst...
Background: Determining a suitable sample size is an important step in the planning of microarray experiments. Increasing the number of arrays gives more statistical power, but ad...
Ilari Scheinin, Jose A. Ferreira, Sakari Knuutila,...