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CONCUR
2009
Springer
13 years 7 months ago
BlenX Static and Dynamic Semantics
We introduce a new programming language called BlenX. It is strongly inspired to process calculi and it is an evolution of Betabinders. It has been specifically designed and implem...
Corrado Priami, Paola Quaglia, Alessandro Romanel
ACSD
2008
IEEE
130views Hardware» more  ACSD 2008»
14 years 4 months ago
BAM: BioAmbient machine
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...
BIBE
2008
IEEE
111views Bioinformatics» more  BIBE 2008»
13 years 12 months ago
Structure learning for biomolecular pathways containing cycles
Bayesian network structure learning is a useful tool for elucidation of regulatory structures of biomolecular pathways. The approach however is limited by its acyclicity constraint...
S. Itani, Karen Sachs, Garry P. Nolan, M. A. Dahle...
JIB
2007
136views more  JIB 2007»
13 years 9 months ago
SABIO-RK: A data warehouse for biochemical reactions and their kinetics
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions...
Olga Krebs, Martin Golebiewski, Renate Kania, Saqi...
ATAL
2006
Springer
14 years 1 months ago
SeSAm: implementation of agent-based simulation using visual programming
In this paper, we present the most important features of SeSAm, a modeling and simulation platform for multi-agent simulations. Based on a declarative, explicit model representati...
Franziska Klügl, Rainer Herrler, Manuel Fehle...