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HPCS
2007
IEEE
14 years 4 months ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu
VW
2000
Springer
128views Virtual Reality» more  VW 2000»
14 years 1 months ago
The World of Framsticks: Simulation, Evolution, Interaction
A three-dimensional virtual world simulation is described, where evolution takes place and it is possible to investigate behaviors of creatures in real-time. Bodies of these creatu...
Maciej Komosinski
WSC
2004
13 years 11 months ago
Modeling and Simulation of Complex Systems with Cell-DEVS
Cell-DEVS enables efficient execution of complex cellular models. The goal of Cell-DEVS is to build discrete-event cell spaces, improving their definition by making the timing spe...
Gabriel A. Wainer
BIBE
2007
IEEE
110views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
Toward Petascale Simulation of Cellular Microphysiology
Abstract-MCell is a Monte Carlo simulator of cell microphysiology, and the scalable variant can be used to study challenging problems of interest to the biological community. MCell...
Scott B. Baden, Terrence J. Sejnowski, Thomas M. B...
IPPS
1999
IEEE
14 years 2 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...