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ANSS
2006
IEEE
14 years 3 months ago
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems
With the availability of huge databases cataloguing the various molecular “parts” of complex biological systems, researchers from multiple disciplines have focused on developi...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
ISMB
1998
13 years 11 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
FBIT
2007
IEEE
14 years 4 months ago
Simulating Biological Pathways with a Continuous Petri Net Using Runge-Kutta Methods
The application of Petri nets to analyze and simulate biological pathways has been developed vigorously. Some of the modifications of Petri nets appeared to perform quantitative a...
Sunku Kang, Byungwoo Lee, Jihoon Yang, Seonho Kim,...
ENTCS
2008
98views more  ENTCS 2008»
13 years 9 months ago
An Intermediate Language for the Simulation of Biological Systems
We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be t...
Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo...
ISBI
2006
IEEE
14 years 3 months ago
Physics-based simulation of biological structures
We describe the goals and proposed design for SimTK, part of the NIH-supported Simbios National Center for Biomedical Computing. SimTK (Simulation ToolKit) will enable biomedical ...
Scott L. Delp, F. Clayton Anderson, Russ B. Altman