With the availability of huge databases cataloguing the various molecular “parts” of complex biological systems, researchers from multiple disciplines have focused on developi...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
The application of Petri nets to analyze and simulate biological pathways has been developed vigorously. Some of the modifications of Petri nets appeared to perform quantitative a...
Sunku Kang, Byungwoo Lee, Jihoon Yang, Seonho Kim,...
We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be t...
Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo...
We describe the goals and proposed design for SimTK, part of the NIH-supported Simbios National Center for Biomedical Computing. SimTK (Simulation ToolKit) will enable biomedical ...
Scott L. Delp, F. Clayton Anderson, Russ B. Altman