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CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 2 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
HPDC
2005
IEEE
14 years 2 months ago
Collective caching: application-aware client-side file caching
Parallel file subsystems in today’s high-performance computers adopt many I/O optimization strategies that were designed for distributed systems. These strategies, for instance...
Wei-keng Liao, Kenin Coloma, Alok N. Choudhary, Le...
HPDC
2005
IEEE
14 years 2 months ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant
ICPPW
2005
IEEE
14 years 2 months ago
Speculative Parallel Threading Architecture and Compilation
Thread-level speculation is a technique that brings thread-level parallelism beyond the data-flow limit by executing a piece of code ahead of time speculatively before all its inp...
Xiao-Feng Li, Zhao-Hui Du, Chen Yang, Chu-Cheow Li...
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