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SDM
2007
SIAM
184views Data Mining» more  SDM 2007»
13 years 9 months ago
Mining Naturally Smooth Evolution of Clusters from Dynamic Data
Many clustering algorithms have been proposed to partition a set of static data points into groups. In this paper, we consider an evolutionary clustering problem where the input d...
Yi Wang, Shi-Xia Liu, Jianhua Feng, Lizhu Zhou
ISMB
2004
13 years 9 months ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo
BMCBI
2008
137views more  BMCBI 2008»
13 years 8 months ago
A dynamic Bayesian network approach to protein secondary structure prediction
Background: Protein secondary structure prediction method based on probabilistic models such as hidden Markov model (HMM) appeals to many because it provides meaningful informatio...
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She
BMCBI
2010
149views more  BMCBI 2010»
13 years 8 months ago
S3DB core: a framework for RDF generation and management in bioinformatics infrastructures
Background: Biomedical research is set to greatly benefit from the use of semantic web technologies in the design of computational infrastructure. However, beyond well defined res...
Jonas S. Almeida, Helena F. Deus, Wolfgang Maass
CORR
2010
Springer
160views Education» more  CORR 2010»
13 years 8 months ago
Scalable Probabilistic Databases with Factor Graphs and MCMC
Incorporating probabilities into the semantics of incomplete databases has posed many challenges, forcing systems to sacrifice modeling power, scalability, or treatment of relatio...
Michael L. Wick, Andrew McCallum, Gerome Miklau