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» Massively Parallel Solutions for Molecular Sequence Analysis
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SP
2002
IEEE
109views Security Privacy» more  SP 2002»
13 years 10 months ago
Scalable atomistic simulation algorithms for materials research
A suite of scalable atomistic simulation programs has been developed for materials research based on space-time multiresolution algorithms. Design and analysis of parallel algorit...
Aiichiro Nakano, Rajiv K. Kalia, Priya Vashishta, ...
RECOMB
2002
Springer
14 years 10 months ago
Monotony of surprise and large-scale quest for unusual words
The problem of characterizing and detecting recurrent sequence patterns such as substrings or motifs and related associations or rules is variously pursued in order to compress da...
Alberto Apostolico, Mary Ellen Bock, Stefano Lonar...
BMCBI
2005
137views more  BMCBI 2005»
13 years 10 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
BMCBI
2008
152views more  BMCBI 2008»
13 years 10 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
ISPA
2004
Springer
14 years 3 months ago
HPL Performance Prevision to Intending System Improvement
HPL is a parallel Linpack benchmark package widely adopted in massive cluster system performance test. On HPL data layout among processors, a law to determine block size NB theoret...
Wenli Zhang, Mingyu Chen, Jianping Fan