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» Massively parallel computing using commodity components
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IWCC
1999
IEEE
14 years 27 days ago
Comparative Performance of a Commodity Alpha Cluster Running Linux and Windows NT
Using a cluster of commodity Alpha processors we compare two software platforms based on Linux and Windows NT and intended to support intensive scientic computations. Networking a...
David Lancaster, Kenji Takeda
CF
2007
ACM
14 years 18 days ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
PROCEDIA
2010
138views more  PROCEDIA 2010»
13 years 3 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...
IPPS
2008
IEEE
14 years 3 months ago
SWAMP: Smith-Waterman using associative massive parallelism
One of the most commonly used tools by computational biologists is some form of sequence alignment. Heuristic alignment algorithms developed for speed and their multiple results s...
Shannon Steinfadt, Johnnie W. Baker
MSS
2007
IEEE
153views Hardware» more  MSS 2007»
14 years 2 months ago
Hybrid Host/Network Topologies for Massive Storage Clusters
The high demand for large scale storage capacity calls for the availability of massive storage solutions with high performance interconnects. Although cluster file systems are rap...
Asha Andrade, Ungzu Mun, Dong Hwan Chung, Alexande...