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» Massively-Parallel Simulation of Biochemical Systems
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BMCBI
2005
156views more  BMCBI 2005»
13 years 7 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer
CONPAR
1994
13 years 12 months ago
The Rewrite Rule Machine Node Architecture and Its Performance
The Rewrite Rule Machine (RRM) is a massively parallel MIMD/SIMD computer designed with the explicit purpose of supporting veryhigh-level parallel programming with rewrite rules. T...
Patrick Lincoln, José Meseguer, Livio Ricci...
EGH
2004
Springer
14 years 1 months ago
Hardware-based simulation and collision detection for large particle systems
Particle systems have long been recognized as an essential building block for detail-rich and lively visual environments. Current implementations can handle up to 10,000 particles...
Andreas Kolb, Lutz Latta, Christof Rezk-Salama
ICDE
2006
IEEE
134views Database» more  ICDE 2006»
14 years 1 months ago
Processing High-Volume Stream Queries on a Supercomputer
Scientific instruments, such as radio telescopes, colliders, sensor networks, and simulators generate very high volumes of data streams that scientists analyze to detect and under...
Erik Zeitler, Tore Risch
BMCBI
2006
175views more  BMCBI 2006»
13 years 8 months ago
Parameter estimation for stiff equations of biosystems using radial basis function networks
Background: The modeling of dynamic systems requires estimating kinetic parameters from experimentally measured time-courses. Conventional global optimization methods used for par...
Yoshiya Matsubara, Shinichi Kikuchi, Masahiro Sugi...