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» Massively-Parallel Simulation of Biochemical Systems
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ISMB
1993
13 years 9 months ago
Protein Sequencing Experiment Planning Using Analogy
Experiment design and execution is a central activity in the natural sciences. The SeqERsystem provides a general architecture for the integration of automated planning techniques...
Brian P. Kettler, Lindley Darden
WCE
2007
13 years 9 months ago
Data Communication and Parallel Computing on Twisted Hypercubes
Massively parallel distributed-memory architectures are receiving increasing attention to meet the increasing demand on processing power. Many topologies have been proposed for int...
Emad Abuelrub
ICCMS
2009
118views more  ICCMS 2009»
13 years 5 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
AB
2007
Springer
14 years 2 months ago
Algorithmic Algebraic Model Checking IV: Characterization of Metabolic Networks
A series of papers, all under the title of Algorithmic Algebraic Model Checking (AAMC), has sought to combine techniques from algorithmic algebra, model checking and dynamical syst...
Venkatesh Mysore, Bud Mishra
AB
2007
Springer
14 years 2 months ago
A Stochastic Pi Calculus for Concurrent Objects
We present SpiCO, a new modeling and simulation language for systems biology. SpiCO is based on the stochastic π-calculus. It supports higher level modeling via multi-profile con...
Céline Kuttler, Cédric Lhoussaine, J...