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» Massively-Parallel Simulation of Biochemical Systems
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WSC
2008
13 years 10 months ago
Simulation of stochastic hybrid systems with switching and reflecting boundaries
Modeling and simulation of biochemical systems are important tasks because they can provide insights into complicated systems where traditional experimentation is expensive or imp...
Derek Riley, Kasandra Riley
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
14 years 2 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
CSB
2005
IEEE
163views Bioinformatics» more  CSB 2005»
14 years 1 months ago
A symbolic approach to the simulation of biochemical models: application to circadian rhythms
Symbolic rewriting systems are gaining interest as tools for simulating biochemical dynamics. Compared to traditional methods based on differential equations, the symbolic approac...
Federico Fontana, Luca Bianco, Vincenzo Manca
JPDC
2006
123views more  JPDC 2006»
13 years 7 months ago
Data redistribution and remote method invocation for coupled components
With the increasing availability of high-performance massively parallel computer systems, the prevalence of sophisticated scientific simulation has grown rapidly. The complexity o...
Felipe Bertrand, Randall Bramley, David E. Bernhol...
ICNC
2005
Springer
14 years 1 months ago
Reaction-Driven Membrane Systems
Abstract. Membrane systems are gaining a prominent role in the modeling of biochemical processes and cellular dynamics. We associate specific reactivity values to the production r...
Luca Bianco, Federico Fontana, Vincenzo Manca