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AAIM
2007
Springer
106views Algorithms» more  AAIM 2007»
13 years 11 months ago
A New Efficient Algorithm for Computing the Longest Common Subsequence
Abstract. The Longest Common Subsequence (LCS) problem is a classic and well-studied problem in computer science. The LCS problem is a common task in DNA sequence analysis with man...
M. Sohel Rahman, Costas S. Iliopoulos
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
SODA
2008
ACM
111views Algorithms» more  SODA 2008»
13 years 9 months ago
On distance to monotonicity and longest increasing subsequence of a data stream
In this paper we consider problems related to the sortedness of a data stream. First we investigate the problem of estimating the distance to monotonicity; given a sequence of len...
Funda Ergün, Hossein Jowhari
FOCS
2007
IEEE
14 years 1 months ago
Lower Bounds on Streaming Algorithms for Approximating the Length of the Longest Increasing Subsequence
We show that any deterministic data-stream algorithm that makes a constant number of passes over the input and gives a constant factor approximation of the length of the longest i...
Anna Gál, Parikshit Gopalan
ICASSP
2011
IEEE
12 years 11 months ago
Subsequence similarity language models
In this work we present the Subsequence Similarity Language Model (S2-LM) which is a new approach to language modeling based on string similarity. As a language model, S2-LM gener...
Juan M. Huerta