Matching and searching computations play an important role in the indexing of data. These computations are typically encoded in very tight loops with a single index variable and a...
This paper presents high-throughput techniques for implementing FSM based string matching hardware on FPGAs. By taking advantage of the fact that string matching operations for di...
Atul Mahajan, Benfano Soewito, Sai K. Parsi, Ning ...
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
FPGAs have appealing features such as customizable internal and external bandwidth and the ability to exploit vast amounts of fine-grain parallelism. In this paper we explore the ...