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» Maximum entropy methods for biological sequence modeling
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RECOMB
2002
Springer
14 years 9 months ago
DNA sequence evolution with neighbor-dependent mutation
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
Peter F. Arndt, Christopher B. Burge, Terence Hwa
LREC
2008
131views Education» more  LREC 2008»
13 years 10 months ago
Learning Morphology with Morfette
Morfette is a modular, data-driven, probabilistic system which learns to perform joint morphological tagging and lemmatization from morphologically annotated corpora. The system i...
Grzegorz Chrupala, Georgiana Dinu, Josef van Genab...
JCB
2002
74views more  JCB 2002»
13 years 8 months ago
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Stafford Noble, Yoram Singe...
NLPRS
2001
Springer
14 years 1 months ago
Named Entity Recognition using Machine Learning Methods and Pattern-Selection Rules
Named Entity recognition, as a task of providing important semantic information, is a critical first step in Information Extraction and QuestionAnswering system. This paper propos...
Choong-Nyoung Seon, Youngjoong Ko, Jeong-Seok Kim,...
BMCBI
2005
122views more  BMCBI 2005»
13 years 9 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...