Sciweavers

439 search results - page 29 / 88
» Maximum entropy methods for biological sequence modeling
Sort
View
CEC
2009
IEEE
14 years 1 months ago
A novel EDAs based method for HP model protein folding
— The protein structure prediction (PSP) problem is one of the most important problems in computational biology. This paper proposes a novel Estimation of Distribution Algorithms...
Benhui Chen, Long Li, Jinglu Hu
COLING
2008
13 years 10 months ago
Homotopy-Based Semi-Supervised Hidden Markov Models for Sequence Labeling
This paper explores the use of the homotopy method for training a semi-supervised Hidden Markov Model (HMM) used for sequence labeling. We provide a novel polynomial-time algorith...
Gholamreza Haffari, Anoop Sarkar
BMCBI
2010
113views more  BMCBI 2010»
13 years 9 months ago
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information
Background: Flavin binding proteins (FBP) plays a critical role in several biological functions such as electron transport system (ETS). These flavoproteins contain very tightly b...
Nitish K. Mishra, Gajendra P. S. Raghava
BMCBI
2011
13 years 4 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
BMCBI
2006
86views more  BMCBI 2006»
13 years 9 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson