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» Maximum entropy methods for biological sequence modeling
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CCECE
2006
IEEE
14 years 3 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
TIT
2008
102views more  TIT 2008»
13 years 9 months ago
On Low-Complexity Maximum-Likelihood Decoding of Convolutional Codes
Abstract--This letter considers the average complexity of maximum-likelihood (ML) decoding of convolutional codes. ML decoding can be modeled as finding the most probable path take...
Jie Luo
IBPRIA
2003
Springer
14 years 2 months ago
Comparison of Log-linear Models and Weighted Dissimilarity Measures
Abstract. We compare two successful discriminative classification algorithms on three databases from the UCI and STATLOG repositories. The two approaches are the log-linear model ...
Daniel Keysers, Roberto Paredes, Enrique Vidal, He...
BMCBI
2010
129views more  BMCBI 2010»
13 years 9 months ago
Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison
Background: Detection of common evolutionary origin (homology) is a primary means of inferring protein structure and function. At present, comparison of protein families represent...
Mindaugas Margelevicius, Ceslovas Venclovas
ATAL
2005
Springer
14 years 2 months ago
Rapid on-line temporal sequence prediction by an adaptive agent
Robust sequence prediction is an essential component of an intelligent agent acting in a dynamic world. We consider the case of near-future event prediction by an online learning ...
Steven Jensen, Daniel Boley, Maria L. Gini, Paul R...