439 search results - page 36 / 88 » Maximum entropy methods for biological sequence modeling |
JMLR
2010
13 years 4 months ago
2010
In this paper, we present an overview of generalized expectation criteria (GE), a simple, robust, scalable method for semi-supervised training using weakly-labeled data. GE fits m...
ICASSP
2008
IEEE
14 years 3 months ago
2008
IEEE
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
JCB
2006
13 years 9 months ago
2006
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
BMCBI
2010
13 years 9 months ago
2010
Background: Cluster analysis is an important technique for the exploratory analysis of biological data. Such data is often high-dimensional, inherently noisy and contains outliers...
SC
2005
ACM
14 years 2 months ago
2005
ACM
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...