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» Maximum entropy methods for biological sequence modeling
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ICML
2007
IEEE
14 years 10 months ago
Local similarity discriminant analysis
We propose a local, generative model for similarity-based classification. The method is applicable to the case that only pairwise similarities between samples are available. The c...
Luca Cazzanti, Maya R. Gupta
RECOMB
2008
Springer
14 years 9 months ago
Constructing Treatment Portfolios Using Affinity Propagation
A key problem of interest to biologists and medical researchers is the selection of a subset of queries or treatments that provide maximum utility for a population of targets. For ...
Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vla...
CORR
2010
Springer
122views Education» more  CORR 2010»
13 years 4 months ago
Concavity of Mutual Information Rate for Input-Restricted Finite-State Memoryless Channels at High SNR
We consider a finite-state memoryless channel with i.i.d. channel state and the input Markov process supported on a mixing finite-type constraint. We discuss the asymptotic behavio...
Guangyue Han, Brian H. Marcus
CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
14 years 28 days ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...
IJFCS
2006
130views more  IJFCS 2006»
13 years 9 months ago
Mealy multiset automata
We introduce the networks of Mealy multiset automata, and study their computational power. The networks of Mealy multiset automata are computationally complete. 1 Learning from Mo...
Gabriel Ciobanu, Viorel Mihai Gontineac