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» Maximum entropy methods for biological sequence modeling
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BMCBI
2004
158views more  BMCBI 2004»
13 years 9 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
ACL
2006
13 years 10 months ago
Morphological Richness Offsets Resource Demand - Experiences in Constructing a POS Tagger for Hindi
In this paper we report our work on building a POS tagger for a morphologically rich language- Hindi. The theme of the research is to vindicate the stand that- if morphology is st...
Smriti Singh, Kuhoo Gupta, Manish Shrivastava, Pus...
RECOMB
2008
Springer
14 years 9 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
BMCBI
2010
150views more  BMCBI 2010»
13 years 8 months ago
DeltaProt: a software toolbox for comparative genomics
Background: Statistical bioinformatics is the study of biological data sets obtained by new micro-technologies by means of proper statistical methods. For a better understanding o...
Steinar Thorvaldsen, Tor Flå, Nils Willassen
SPIRE
2010
Springer
13 years 7 months ago
Identifying SNPs without a Reference Genome by Comparing Raw Reads
Next generation sequencing (NGS) technologies are being applied to many fields of biology, notably to survey the polymorphism across individuals of a species. However, while single...
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, ...