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BMCBI
2006
116views more  BMCBI 2006»
13 years 8 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
JSC
2010
155views more  JSC 2010»
13 years 6 months ago
Algorithms for solving linear systems over cyclotomic fields
We consider the problem of solving a linear system Ax = b over a cyclotomic field. What makes cyclotomic fields of special interest is that we can easily find a prime p that sp...
Liang Chen, Michael B. Monagan
SIGECOM
2011
ACM
232views ECommerce» more  SIGECOM 2011»
12 years 11 months ago
Near optimal online algorithms and fast approximation algorithms for resource allocation problems
We present algorithms for a class of resource allocation problems both in the online setting with stochastic input and in the offline setting. This class of problems contains man...
Nikhil R. Devanur, Kamal Jain, Balasubramanian Siv...
STOC
2009
ACM
145views Algorithms» more  STOC 2009»
14 years 9 months ago
Finding, minimizing, and counting weighted subgraphs
d Abstract] Virginia Vassilevska School of Mathematics Institute for Advanced Study Princeton, NJ 08540 USA virgi@math.ias.edu Ryan Williams School of Mathematics Institute for Adv...
Virginia Vassilevska, Ryan Williams