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CSDA
2011
13 years 2 months ago
Approximate forward-backward algorithm for a switching linear Gaussian model
Motivated by the application of seismic inversion in the petroleum industry we consider a hidden Markov model with two hidden layers. The bottom layer is a Markov chain and given ...
Hugo Hammer, Håkon Tjelmeland
BMCBI
2005
121views more  BMCBI 2005»
13 years 7 months ago
Automated methods of predicting the function of biological sequences using GO and BLAST
Background: With the exponential increase in genomic sequence data there is a need to develop automated approaches to deducing the biological functions of novel sequences with hig...
Craig E. Jones, Ute Baumann, Alfred L. Brown
PKDD
2009
Springer
147views Data Mining» more  PKDD 2009»
14 years 2 months ago
Kernel Polytope Faces Pursuit
Abstract. Polytope Faces Pursuit (PFP) is a greedy algorithm that approximates the sparse solutions recovered by 1 regularised least-squares (Lasso) [4,10] in a similar vein to (Or...
Tom Diethe, Zakria Hussain
BIBE
2007
IEEE
147views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
A New Alignment-Independent Algorithm for Clustering Protein Sequences
—The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important, the challenge is to identify subfamilies of evolut...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski
ICDE
2006
IEEE
196views Database» more  ICDE 2006»
14 years 9 months ago
Closure-Tree: An Index Structure for Graph Queries
Graphs have become popular for modeling structured data. As a result, graph queries are becoming common and graph indexing has come to play an essential role in query processing. ...
Huahai He, Ambuj K. Singh