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AVI
2010
13 years 10 months ago
Wakame: sense making of multi-dimensional spatial-temporal data
As our ability to measure the world around us improves, we are quickly generating massive quantities of high-dimensional, spatial-temporal data. In this paper, we concern ourselve...
Clifton Forlines, Kent Wittenburg
AVI
2006
13 years 10 months ago
Shakespeare's complete works as a benchmark for evaluating multiscale document navigation techniques
In this paper, we describe an experimental platform dedicated to the comparative evaluation of multiscale electronic-document navigation techniques. One noteworthy characteristic ...
Yves Guiard, Michel Beaudouin-Lafon, Yangzhou Du, ...
ALMOB
2008
85views more  ALMOB 2008»
13 years 9 months ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
BMCBI
2010
82views more  BMCBI 2010»
13 years 9 months ago
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
Background: Illumina's second-generation sequencing platform is playing an increasingly prominent role in modern DNA and RNA sequencing efforts. However, rapid, simple, stand...
Murray P. Cox, Daniel A. Peterson, Patrick J. Bigg...
BMCBI
2010
142views more  BMCBI 2010»
13 years 9 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...