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IJFCS
2008
63views more  IJFCS 2008»
13 years 8 months ago
How to Synchronize the Activity of All Components of a P System?
We consider the problem of synchronizing the activity of all the membranes of a P system. After pointing at the connection with a similar problem dealt with in the field of cellul...
Francesco Bernardini, Marian Gheorghe, Maurice Mar...
ISMB
1998
13 years 9 months ago
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
CSB
2005
IEEE
124views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins
As the first step toward a multi-scale, hierarchical computational approach for membrane protein structure prediction, the packing of transmembrane helices was modeled at the resi...
Zhong Chen, Ying Xu
NC
2010
150views Neural Networks» more  NC 2010»
13 years 6 months ago
Deterministic and stochastic P systems for modelling cellular processes
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological systems and illustrates th...
Marian Gheorghe, Vincenzo Manca, Francisco Jos&eac...
ACTA
2004
87views more  ACTA 2004»
13 years 8 months ago
P systems with symport/antiport simulating counter automata
The generative capability of several variants of P systems with symport/antiport is studied via the simulation of counter automata. This leads to the reduction of the complexity, e...
Pierluigi Frisco, Hendrik Jan Hoogeboom