We consider the problem of synchronizing the activity of all the membranes of a P system. After pointing at the connection with a similar problem dealt with in the field of cellul...
Francesco Bernardini, Marian Gheorghe, Maurice Mar...
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
As the first step toward a multi-scale, hierarchical computational approach for membrane protein structure prediction, the packing of transmembrane helices was modeled at the resi...
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological systems and illustrates th...
Marian Gheorghe, Vincenzo Manca, Francisco Jos&eac...
The generative capability of several variants of P systems with symport/antiport is studied via the simulation of counter automata. This leads to the reduction of the complexity, e...