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DAI
1998
Springer
14 years 20 days ago
Physically Based, Self-Organizing Cellular Automata
A physically based system of interacting polyhedral objects is used to model self-assembly and spontaneous organization of complex structures. The surfaces of the polyhedra in the ...
Alan Dorin
JSCIC
2008
148views more  JSCIC 2008»
13 years 8 months ago
Finite Element-Based Level Set Methods for Higher Order Flows
In this paper we shall discuss the numerical simulation of higher order geometric flows by level set methods. Main examples under considerations are surface diffusion and the Will...
Martin Burger, Christina Stöcker, Axel Voigt
NAR
1998
101views more  NAR 1998»
13 years 8 months ago
The PRINTS protein fingerprint database in its fifth year
PRINTS is a database of protein family ‘fingerprints’ offering a diagnostic resource for newly-determined sequences. By contrast with PROSITE, which uses single consensus expr...
Terri K. Attwood, Michael E. Beck, Darren R. Flowe...
IPPS
2010
IEEE
13 years 6 months ago
Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs
The Coarse-Grained Monte Carlo (CGMC) method is a multi-scale stochastic mathematical and simulation framework for spatially distributed systems. CGMC simulations are important too...
Lifan Xu, Michela Taufer, Stuart Collins, Dionisio...
SIAMSC
2008
131views more  SIAMSC 2008»
13 years 8 months ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...