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HPCC
2009
Springer
14 years 1 months ago
On the Performance of Commit-Time-Locking Based Software Transactional Memory
Compared with lock-based synchronization techniques, Software Transactional Memory (STM) can significantly improve the programmability of multithreaded applications. Existing res...
Zhengyu He, Bo Hong
IPPS
2009
IEEE
14 years 3 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
IPPS
2006
IEEE
14 years 2 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
SCFBM
2008
92views more  SCFBM 2008»
13 years 8 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
ISPASS
2007
IEEE
14 years 3 months ago
DRAM-Level Prefetching for Fully-Buffered DIMM: Design, Performance and Power Saving
We have studied DRAM-level prefetching for the fully buffered DIMM (FB-DIMM) designed for multi-core processors. FB-DIMM has a unique two-level interconnect structure, with FB-DIM...
Jiang Lin, Hongzhong Zheng, Zhichun Zhu, Zhao Zhan...