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NAR
2008
204views more  NAR 2008»
13 years 9 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata
SIGIR
2008
ACM
13 years 9 months ago
Enhancing text clustering by leveraging Wikipedia semantics
Most traditional text clustering methods are based on "bag of words" (BOW) representation based on frequency statistics in a set of documents. BOW, however, ignores the ...
Jian Hu, Lujun Fang, Yang Cao, Hua-Jun Zeng, Hua L...
BIOINFORMATICS
2005
72views more  BIOINFORMATICS 2005»
13 years 9 months ago
Use of within-array replicate spots for assessing differential expression in microarray experiments
Motivation. Spotted arrays are often printed with probes in duplicate or triplicate, but current methods for assessing differential expression are not able to make full use of the...
Gordon K. Smyth, Joëlle Michaud, Hamish S. Sc...
BMCBI
2005
118views more  BMCBI 2005»
13 years 9 months ago
Variation in structural location and amino acid conservation of functional sites in protein domain families
Background: The functional sites of a protein present important information for determining its cellular function and are fundamental in drug design. Accordingly, accurate methods...
Birgit Pils, Richard R. Copley, Jörg Schultz
BMCBI
2005
108views more  BMCBI 2005»
13 years 9 months ago
Storing, linking, and mining microarray databases using SRS
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
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