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» Methods and Statistics for Combining Motif Match Scores
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TREC
2007
13 years 8 months ago
Access to Legal Documents: Exact Match, Best Match, and Combinations
: In this paper, we document our efforts in participating to the TREC 2007 Legal track. We had multiple aims: First, to experiment with using different query formulations, trying t...
Avi Arampatzis, Jaap Kamps, Martijn Kooken, Nir Nu...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2006
108views more  BMCBI 2006»
13 years 7 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
TCBB
2011
13 years 2 months ago
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
A TOPS diagram is a simplified description of the topology of a protein using a graph where nodes are α-helices and β-strands, and edges correspond to chirality relations and p...
J. Rocha
HICSS
2003
IEEE
93views Biometrics» more  HICSS 2003»
14 years 25 days ago
A General Method for Statistical Performance Evaluation
In the paper, we propose a general method for statistical performance evaluation. The method incorporates various statistical metrics and automatically selects an appropriate stat...
Longzhuang Li, Yi Shang, Wei Zhang, Hongchi Shi