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KDD
2004
ACM
209views Data Mining» more  KDD 2004»
14 years 8 months ago
A data mining approach to modeling relationships among categories in image collection
This paper proposes a data mining approach to modeling relationships among categories in image collection. In our approach, with image feature grouping, a visual dictionary is cre...
Ruofei Zhang, Zhongfei (Mark) Zhang, Sandeep Khanz...
BMCBI
2008
128views more  BMCBI 2008»
13 years 8 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2010
141views more  BMCBI 2010»
13 years 8 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
BMCBI
2010
129views more  BMCBI 2010»
13 years 8 months ago
Automatic prediction of catalytic residues by modeling residue structural neighborhood
Background: Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classific...
Elisa Cilia, Andrea Passerini
ALMOB
2008
95views more  ALMOB 2008»
13 years 8 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen