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» Methods for Predicting Target Sites of Transcription Factors
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WSDM
2012
ACM
352views Data Mining» more  WSDM 2012»
12 years 2 months ago
Multi-relational matrix factorization using bayesian personalized ranking for social network data
A key element of the social networks on the internet such as Facebook and Flickr is that they encourage users to create connections between themselves, other users and objects. On...
Artus Krohn-Grimberghe, Lucas Drumond, Christoph F...
ENGL
2008
78views more  ENGL 2008»
13 years 7 months ago
Threshold for Positional Weight Matrix
In biological sequence research, the positional weight matrix (PWM) is often used to search for putative transcription factor binding sites. A set of experimentally verified oligon...
Yunlian Pan, Sieu Phan
BMCBI
2004
112views more  BMCBI 2004»
13 years 7 months ago
SPOC: A widely distributed domain associated with cancer, apoptosis and transcription
Background: The Split ends (Spen) family are large proteins characterised by N-terminal RNA recognition motifs (RRMs) and a conserved SPOC (Spen paralog and ortholog C-terminal) d...
Luis Sánchez-Pulido, Ana María Rojas...
IDEAL
2004
Springer
14 years 22 days ago
PromSearch: A Hybrid Approach to Human Core-Promoter Prediction
This paper presents an effective core-promoter prediction system on human DNA sequence. The system, named PromSearch, employs a hybrid approach which combines search-by-content met...
Byoung-Hee Kim, Seong-Bae Park, Byoung-Tak Zhang
BMCBI
2008
169views more  BMCBI 2008»
13 years 7 months ago
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Background: The regulation of gene expression is complex and occurs at many levels, including transcriptional and post-transcriptional, in metazoans. Transcriptional regulation is...
Christina Chaivorapol, Collin Melton, Grace Wei, R...