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» Methods for Random Modularization of Biological Networks
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BMCBI
2004
323views more  BMCBI 2004»
13 years 7 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
KDD
2004
ACM
139views Data Mining» more  KDD 2004»
14 years 8 months ago
Learning a complex metabolomic dataset using random forests and support vector machines
Metabolomics is the omics science of biochemistry. The associated data include the quantitative measurements of all small molecule metabolites in a biological sample. These datase...
Young Truong, Xiaodong Lin, Chris Beecher
IDA
2010
Springer
13 years 9 months ago
A Framework for Path-Oriented Network Simplification
Abstract. We propose a generic framework and methods for simplification of large networks. The methods can be used to improve the understandability of a given network, to complemen...
Hannu Toivonen, Sébastien Mahler, Fang Zhou
ISCC
2006
IEEE
154views Communications» more  ISCC 2006»
14 years 1 months ago
Decentralized Load Balancing for Highly Irregular Search Problems
In this paper, we present a Dynamic Load Balancing (DLB) policy for problems characterized by a highly irregular search tree, whereby no reliable workload prediction is available....
Giuseppe Di Fatta, Michael R. Berthold
BMCBI
2006
141views more  BMCBI 2006»
13 years 7 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...