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    BMCBI
    2005
    140views more  BMCBI 2005»
    Dissecting systems-wide data using mixture models: application to identify affected cellular processes
    13 years 6 months ago
    Dissecting systems-wide data using mixture models: application to identify affected cellular processes
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    Background: Functional analysis of data from genome-scale experiments, such as microarrays, requires an extensive selection of differentially expressed genes. Under many condition...
    J. Peter Svensson, Renée X. de Menezes, Ing...
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    BMCBI
    2006
    160views more  BMCBI 2006»
    MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation
    13 years 6 months ago
    MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation
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    Background: The high-density oligonucleotide microarray (GeneChip) is an important tool for molecular biological research aiming at large-scale detection of small nucleotide polym...
    Leandro Hermida, Olivier Schaad, Philippe Demougin...
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    BMCBI
    2008
    135views more  BMCBI 2008»
    Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
    13 years 6 months ago
    Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
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    Background: Normalization is essential in dual-labelled microarray data analysis to remove nonbiological variations and systematic biases. Many normalization methods have been use...
    Huiling Xiong, Dapeng Zhang, Christopher J. Martyn...
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    BMCBI
    2008
    138views more  BMCBI 2008»
    Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
    13 years 6 months ago
    Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
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    Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
    Arun Rawat, Georg J. Seifert, Youping Deng
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    BMCBI
    2008
    138views more  BMCBI 2008»
    Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
    13 years 6 months ago
    Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
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    Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
    Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
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