In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
MPI (the Message Passing Interface) continues to be the dominant programming model for parallel machines of all sizes, from small Linux clusters to the largest parallel supercomput...
The use of Java for parallel programming on clusters relies on the need of efficient communication middleware and high-speed cluster interconnect support. Nevertheless, currently...
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...
Jing Fu, Ning Liu, Onkar Sahni, Kenneth E. Jansen,...