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» Middleware and Performance Issues for Computational Finance ...
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CF
2007
ACM
14 years 11 days ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
IPPS
2008
IEEE
14 years 2 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
APCSAC
2007
IEEE
14 years 2 months ago
Open Issues in MPI Implementation
MPI (the Message Passing Interface) continues to be the dominant programming model for parallel machines of all sizes, from small Linux clusters to the largest parallel supercomput...
Rajeev Thakur, William Gropp
IPPS
2007
IEEE
14 years 2 months ago
High Performance Java Sockets for Parallel Computing on Clusters
The use of Java for parallel programming on clusters relies on the need of efficient communication middleware and high-speed cluster interconnect support. Nevertheless, currently...
Guillermo L. Taboada, Juan Touriño, Ramon D...
IPPS
2010
IEEE
13 years 5 months ago
Scalable parallel I/O alternatives for massively parallel partitioned solver systems
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...
Jing Fu, Ning Liu, Onkar Sahni, Kenneth E. Jansen,...