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BMCBI
2005
246views more  BMCBI 2005»
13 years 8 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
JIB
2010
90views more  JIB 2010»
13 years 7 months ago
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response
s text mining techniques over Medline abstracts as a method for accessing both these bodies of evidence in a consistent way. In an example use case, we apply our method to create a...
Keywan Hassani-Pak, Roxane Legaie, Catherine Canev...
BMCBI
2010
134views more  BMCBI 2010»
13 years 9 months ago
R-Gada: a fast and flexible pipeline for copy number analysis in association studies
Background: Genome-wide association studies (GWAS) using Copy Number Variation (CNV) are becoming a central focus of genetic research. CNVs have successfully provided target genom...
Roger Pique-Regi, Alejandro Cáceres, Juan R...
BMCBI
2006
127views more  BMCBI 2006»
13 years 9 months ago
Automatic discovery of cross-family sequence features associated with protein function
Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
Markus Brameier, Josien Haan, Andrea Krings, Rober...
IQIS
2004
ACM
14 years 2 months ago
Mining for Patterns in Contradictory Data
Information integration is often faced with the problem that different data sources represent the same set of the real-world objects, but give conflicting values for specific prop...
Heiko Müller, Ulf Leser, Johann Christoph Fre...