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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 7 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
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    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2005
    189views more  BMCBI 2005»
    Quantitative inference of dynamic regulatory pathways via microarray data
    13 years 7 months ago
    Quantitative inference of dynamic regulatory pathways via microarray data
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    Background: The cellular signaling pathway (network) is one of the main topics of organismic investigations. The intracellular interactions between genes in a signaling pathway ar...
    Wen-Chieh Chang, Chang-Wei Li, Bor-Sen Chen
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    BMCBI
    2010
    115views more  BMCBI 2010»
    Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat l
    13 years 7 months ago
    Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat l
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    Background: Microarray technology is a powerful and widely accepted experimental technique in molecular biology that allows studying genome wide transcriptional responses. However...
    Tung T. Nguyen, Richard R. Almon, Debra C. DuBois,...
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    BIOINFORMATICS
    2005
    105views more  BIOINFORMATICS 2005»
    MADE4: an R package for multivariate analysis of gene expression data
    13 years 7 months ago
    MADE4: an R package for multivariate analysis of gene expression data
    Download  www.hsph.harvard.edu
    Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene expression data. MADE4 accepts a wide variety of gene expression d...
    Aedín C. Culhane, Jean Thioulouse, Guy Perr...
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    BMCBI
    2008
    128views more  BMCBI 2008»
    In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
    13 years 7 months ago
    In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
    Download  www.biomedcentral.com
    Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
    Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
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