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BMCBI
2008
160views more  BMCBI 2008»
13 years 10 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
BMCBI
2008
122views more  BMCBI 2008»
13 years 10 months ago
Reconstructing networks of pathways via significance analysis of their intersections
Background: Significance analysis at single gene level may suffer from the limited number of samples and experimental noise that can severely limit the power of the chosen statist...
Mirko Francesconi, Daniel Remondini, Nicola Nerett...
BMCBI
2008
139views more  BMCBI 2008»
13 years 10 months ago
New challenges for text mining: mapping between text and manually curated pathways
Background: Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the identification of th...
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okan...
BMCBI
2008
90views more  BMCBI 2008»
13 years 10 months ago
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions
Background: The rapid growth of protein-protein interaction (PPI) data has led to the emergence of PPI network analysis. Despite advances in high-throughput techniques, the intera...
Sheng-An Lee, Chen-hsiung Chan, Chi-Hung Tsai, Jin...
CORR
2010
Springer
146views Education» more  CORR 2010»
13 years 10 months ago
An Empirical Study on Content Bundling in BitTorrent Swarming System
Despite the tremendous success of BitTorrent, its swarming system suffers from a fundamental limitation: lower or no availability of unpopular contents. Recently, Menasche et al. ...
Jinyoung Han, Taejoong Chung, Seungbae Kim, Hyunch...