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POPL
2007
ACM
16 years 6 months ago
Variance analyses from invariance analyses
An invariance assertion for a program location is a statement that always holds at during execution of the program. Program invariance analyses infer invariance assertions that ca...
Josh Berdine, Aziem Chawdhary, Byron Cook, Dino Di...
POPL
2005
ACM
16 years 6 months ago
Context logic and tree update
Spatial logics have been used to describe properties of treelike structures (Ambient Logic) and in a Hoare style to reason about dynamic updates of heap-like structures (Separatio...
Cristiano Calcagno, Philippa Gardner, Uri Zarfaty
POPL
2005
ACM
16 years 6 months ago
Permission accounting in separation logic
A lightweight logical approach to race-free sharing of heap storage between concurrent threads is described, based on the notion of permission to access. Transfer of permission be...
Richard Bornat, Cristiano Calcagno, Peter W. O'Hea...
RECOMB
2008
Springer
16 years 6 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
RECOMB
2005
Springer
16 years 6 months ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
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