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SPAA
2006
ACM
14 years 1 months ago
Modeling instruction placement on a spatial architecture
In response to current technology scaling trends, architects are developing a new style of processor, known as spatial computers. A spatial computer is composed of hundreds or eve...
Martha Mercaldi, Steven Swanson, Andrew Petersen, ...
BMCBI
2011
13 years 2 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
ICDE
2010
IEEE
195views Database» more  ICDE 2010»
13 years 7 months ago
Statistics-driven workload modeling for the Cloud
— A recent trend for data-intensive computations is to use pay-as-you-go execution environments that scale transparently to the user. However, providers of such environments must...
Archana Ganapathi, Yanpei Chen, Armando Fox, Randy...
IEEEPACT
2005
IEEE
14 years 1 months ago
Communication Optimizations for Fine-Grained UPC Applications
Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applic...
Wei-Yu Chen, Costin Iancu, Katherine A. Yelick
ICCS
2001
Springer
14 years 1 days ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow