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ICCS
2001
Springer
14 years 1 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
BMCBI
2008
166views more  BMCBI 2008»
13 years 8 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
BMCBI
2008
208views more  BMCBI 2008»
13 years 8 months ago
GraphFind: enhancing graph searching by low support data mining techniques
Background: Biomedical and chemical databases are large and rapidly growing in size. Graphs naturally model such kinds of data. To fully exploit the wealth of information in these...
Alfredo Ferro, Rosalba Giugno, Misael Mongiov&igra...
JPDC
2000
141views more  JPDC 2000»
13 years 8 months ago
A System for Evaluating Performance and Cost of SIMD Array Designs
: SIMD arrays are likely to become increasingly important as coprocessors in domain specific systems as architects continue to leverage RAM technology in their design. The problem ...
Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais K...
HOTOS
2003
IEEE
14 years 1 months ago
Palimpsest: Soft-Capacity Storage for Planetary-Scale Services
Distributed writable storage systems typically provide NFS-like semantics and unbounded persistence for files. We claim that for planetary-scale distributed services such facilit...
Timothy Roscoe, Steven Hand