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» Models and Methods in Comparative Genomics
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BMCBI
2008
132views more  BMCBI 2008»
13 years 11 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
BMCBI
2004
128views more  BMCBI 2004»
13 years 10 months ago
Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in struc
Background: We establish that the occurrence of protein folds among genomes can be accurately described with a Weibull function. Systems which exhibit Weibull character can be int...
Artem Cherkasov, Shannan J. Ho Sui, Robert C. Brun...
BMCBI
2005
84views more  BMCBI 2005»
13 years 10 months ago
A method of precise mRNA/DNA homology-based gene structure prediction
Background: Accurate and automatic gene finding and structural prediction is a common problem in bioinformatics, and applications need to be capable of handling non-canonical spli...
Alexander G. Churbanov, Mark Pauley, Daniel Quest,...
CIKM
2009
Springer
14 years 3 months ago
A comparative study of methods for estimating query language models with pseudo feedback
We systematically compare five representative state-of-theart methods for estimating query language models with pseudo feedback in ad hoc information retrieval, including two var...
Yuanhua Lv, ChengXiang Zhai
BMCBI
2010
152views more  BMCBI 2010»
13 years 11 months ago
Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks
Background: A gene-regulatory network (GRN) refers to DNA segments that interact through their RNA and protein products and thereby govern the rates at which genes are transcribed...
Martin T. Swain, Johannes J. Mandel, Werner Dubitz...