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» Models and Methods in Comparative Genomics
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TREC
2004
14 years 11 days ago
TREC 2004 Genomics Track Experiments at IUB
This paper describes the methods we developed for the three tasks of the TREC Genomics Track, i.e., ad hoc retrieval, triage, and annotation tasks. For the ad hoc retrieval task, ...
Kazuhiro Seki, James C. Costello, Vasanth R. Singa...
BIB
2008
113views more  BIB 2008»
13 years 11 months ago
Identification of replication origins in prokaryotic genomes
The availability of hundreds of complete bacterial genomes has created new challenges and simultaneously opportunities for bioinformatics. In the area of statistical analysis of g...
Natalia V. Sernova, Mikhail S. Gelfand
BMCBI
2004
200views more  BMCBI 2004»
13 years 11 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
BMCBI
2005
94views more  BMCBI 2005»
13 years 11 months ago
Visualization-based discovery and analysis of genomic aberrations in microarray data
Background: Chromosomal copy number changes (aneuploidies) play a key role in cancer progression and molecular evolution. These copy number changes can be studied using microarray...
Chad L. Myers, Xing Chen, Olga G. Troyanskaya
TCBB
2010
91views more  TCBB 2010»
13 years 5 months ago
SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition
This paper integrates the signal, context and structure features for genome-wide promoter recognition, which is critical in many DNA sequence analysis tasks. First, CpG islands ar...
Jia Zeng, Xiaoyu Zhao, Xiao-Qin Cao, Hong Yan